Index

A

analysis_factory (module)

B

Blocks (class in histogram.density_histogram)

butane() (in module examples)

C

calculate_compressibility() (in module histogram.density_histogram) calculate_density() (in module histogram.density_histogram) calculate_P_Z() (histogram.density_histogram.DPD method)

calculate_total_densities() (in module histogram.density_histogram) check_arguments() (histogram.density_histogram.Blocks method) (histogram.density_histogram.DPD method) choose_output_file_path() (histogram.density_histogram.Blocks method)

D

DPD (class in histogram.density_histogram)

E

example_bin_width() (in module examples)

examples (module)

F

fit_density_peaks() (histogram.density_histogram.DPD method)

fit_gaussian() (histogram.density_histogram.DPD method)

G

gaussian() (in module histogram.density_histogram)

H

histogram.chem_constants (module) histogram.density_histogram (module) histogram.reader (module)

histogram.trajectory_histogram (module) histogram.writer (module) histogram_P_Z_data() (histogram.density_histogram.DPD method)

I

initialize_data() (histogram.density_histogram.Blocks method) (histogram.trajectory_histogram.Trajectory method)

J

jac_gaussian() (in module histogram.density_histogram)

M

main() (histogram.density_histogram.Blocks method) (histogram.density_histogram.DPD method) (histogram.trajectory_histogram.Trajectory method)

make_block_averages() (in module histogram.density_histogram)

O

output_blocks() (histogram.density_histogram.Blocks method)

output_results() (histogram.density_histogram.DPD method)

P

parse_arguments() (in module histogram.density_histogram) pentanal() (in module examples)

plot_trajectory (module) plotting_util (module)

R

read_fort12() (in module histogram.reader)

run() (in module run_histogram) run_histogram (module)

S

store_data() (histogram.density_histogram.DPD method)

T

Trajectory (class in histogram.trajectory_histogram)

U

update_data_box() (in module histogram.density_histogram)

update_data_molty() (in module histogram.density_histogram)